gcMeta: integrated microbiome research platform

Preprocessing

ToolsKey wordsLinks
SRAtoolkit formatting   
ART simulation   
pIRS simulation   
BBtools ( map ,mapmerge , dedupe , tadploe )trimming, mapping, merging, reformatting  
fastQC quality control checking   
cutadapt trimming   
Trimmomatic trimming   
fastp quality control checking, trimming   
dustmasker identifying and masking   
DRISEE remove duplication   
Musket correction   
SOAPec correction   
LoRDEC correction (TGS)   
proovread correction (TGS)   
Quiver correction, polishing (TGS)   
FLASH merging