gcMeta: integrated microbiome research platform

Metagenome Analysis

ToolsKey wordsLinks
QIIME( 1 , 2 ) quality filtering, taxonomic assignment, phylogenetic reconstruction, diversity analyses, visualization (16s)  
LEfSe biomarker discovery   
PICRUSt function predicting (16s)   
MetaCV taxnomic profiling   
k-SLAM taxnomic profiling based on k-mer   
Kaiju taxnomic profiling   
Centrifuge taxnomic profiling   
DUDes taxnomic profiling   
mOTU taxnomic profiling based on 40 marker genes   
StrainEst strain level profiling   
Mash distance calculation   
sourmash similarity , taxnomic profiling   
MetaPhlAn2 taxnomic profiling   
HUMAnN2 function profiling   
CONCOCT metagenomic bining   
MaxBin2 metagenomic bining   
MetaBAT2 metagenomic bining   
AbundanceBin metagenomic bining   
VirFinder virus identifying   
VirHostMatcherhosts of virus matching