gcMeta: integrated microbiome research platform

Comparative Analysis

ToolsKey wordsLinks
orthoANI distance calculation   
CD-hit protein clustering   
MUMmer long sequence alignment   
BWA ( ALN , MEM , SW )reads mapping   
Bowtie2 reads mapping   
samtools ( sort , faidx , flagstat , mpileup )sam file management   
BLAST ( blastn , blastp , blastx , tblastn )local alignment   
BLAT fast local alignment   
diamond ultra fast local alignment   
STAR spliced alignment (RNA)   
Tophat2 spliced alignment (RNA)   
hisat2 spliced alignment (RNA)   
blasr long reads with high error mapping (TGS)